Journal Article Medoidshift clustering applied to genomic bulk tumor data 2016 • BMC Genomics • 17: Roman T, Xie L, Schwartz R
Journal Article Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation 2016 • PLoS ONE • 11(5): Smith GR, Xie L, Schwartz R
Journal Article Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis 2016 • International Journal of Cancer • 138(1):98-109 Wangsa D, Chowdhury SA, Ryott M, Gertz EM, Elmberger G, Auer G, Lundqvist EA, Kueffer S, Stroebel P, Schaeffer AA, Schwartz R, Munck-Wikland E, Ried T, Heselmeyer-Haddad K
Journal Article Reference-free inference of tumor phylogenies from single-cell sequencing data (vol 16, S7, 2015) 2016 • BMC Genomics • 17: Subramanian A, Schwartz R
Journal Article A simplicial complex-based approach to unmixing tumor progression data 2015 • BMC Bioinformatics • 16: Roman T, Nayyeri A, Fasy BT, Schwartz R
Journal Article Applying Derivative-Free Optimization to Fit Kinetic Parameters of Viral Capsid Self-Assembly Models from Multi-Source Bulk in vitro Data 2015 • Biophysical Journal • 108(2):470A-471A Xie L, Smith G, Schwartz R
Journal Article Computationally Projecting the Influence of Nucleic Acid on Pathways of Nucleation-Limited Virus Capsid Assembly 2015 • Biophysical Journal • 108(2):319A-319A Smith GR, Xie L, Schwartz R
Journal Article Identification of Novel Mutations by Exome Sequencing in African American Colorectal Cancer Patients 2015 • Cancer • 121(1):34-42 Ashktorab H, Daremipouran M, Devaney J, Varma S, Rahi H, Lee E, Shokrani B, Schwartz R, Nickerson ML, Brim H
Conference Improved deconvolution of heterogeneous tumor data to reconstruct clonal evolution from bulk genomic samples 2015 • Cancer Research • 75: Roman T, Schwartz R
Journal Article Inferring models of multiscale copy number evolution for single-tumor phylogenetics 2015 • Bioinformatics • 31(12):258-267 Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schaeffer AA, Schwartz R
Journal Article Machine Learning Approaches for Predicting Radiation Therapy Outcomes: A Clinician's Perspective 2015 • International Journal of Radiation Oncology Biology Physics • 93(5):1127-1135 Kang J, Schwartz R, Flickinger J, Beriwal S
Conference Reconstructing evolutionary models of tumor progression from single-cell heterogeneity data 2015 • Cancer Research • 75: Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schaeffer A, Schwartz R
Conference Reference-free inference of tumor phylogenies from single-cell sequencing data 2015 • BMC Genomics • 16: Subramanian A, Schwartz R
Conference Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration 2015 • Cancer Research • 75: Hernandez LS, Bradley A, Gaiser T, Andersson S, Gertz EM, Chowdhury SA, Schwartz R, Schaeffer A, Heselmeyer-Haddad K, Ried T
Journal Article Structurally Governed Cell Mechanotransduction through Multiscale Modeling 2015 • Scientific Reports • 5: Kang J, Puskar KM, Ehrlicher AJ, LeDuc PR, Schwartz RS
Journal Article A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers 2014 • Cancer Informatics • 13:89-100 Shackney S, Chowdhury S, Schwartz R
Journal Article Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics 2014 • PLoS Computational Biology • 10(7): Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schaeffer AA, Schwartz R
Journal Article Applying Molecular Crowding Models to Simulations of Virus Capsid Assembly <i>In Vitro</i> 2014 • Biophysical Journal • 106(1):310-320 Smith GR, Xie L, Lee B, Schwartz R
Journal Article Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies 2014 • PLoS Computational Biology • 10(3): Welch L, Lewitter F, Schwartz R, Brooksbank C, Radivojac P, Gaeta B, Schneider MV
Conference Evaluating the Influence of Environment on Virus Capsid Assembly Pathways through Stochastic Simulation 2014 • Biophysical Journal • 106(2):61A-61A Smith GR, Xie L, Lee B, Schwartz R
Conference Inferring evolutionary models of tumor progression from single-cell heterogeneity data 2014 • Cancer Research • 74(19): Chowdhury SA, Subramanian A, Schaeffer AA, Shackney SE, Wangsa D, Heselmeyer-Haddad K, Ried T, Schwartz R
Journal Article Network and Pathway Analysis of Cancer Susceptibility (A) 2014 • Cancer Informatics • 13:125-127 Guo N, Schwartz R, Qian J, Jia P, Deng Y
Journal Article Phenotypic Signatures Arising from Unbalanced Bacterial Growth 2014 • PLoS Computational Biology • 10(8): Tan C, Smith RP, Tsai M-C, Schwartz R, You L
Conference Reference-free Inference of Tumor Phylogenies from Single-Cell Sequencing Data 2014 • IEEE ... International Conference on Computational Advances in Bio and Medical Sciences : [proceedings]. IEEE International Conference on Computational Advances in Bio and Medical Sciences Subramanian A, Schwartz R
